| Player | Joined | Left | Profit |
|---|---|---|---|
| Massimo Ambrosini | 3 600 000 | Released | 50 400 000 |
| Wilfried Bouma | 0 | 37 000 000 | 37 000 000 |
| Juan Román Riquelme | 16 000 000 | Released | 20 000 000 |
| Pablo Aimar | Free Transfer | Released | 24 000 000 |
| Julius Aghahowa | Free Transfer | 27 500 000 | 23 500 000 |
| Mark Kerr | 650 000 | Released | 26 350 000 |
| Jairo Fernando Castillo | Free Transfer | 23 500 000 | 23 500 000 |
| Kevin Hofland | 0 | 22 000 000 | 22 000 000 |
| Kieron Dyer | 0 | Released | 20 000 000 |
| Matei Mirel Rãdoi | Free Transfer | Released | 17 100 000 |
| Sebastião Lopes | Free Transfer | Released | 20 000 000 |
| Milen Petkov | 19 000 000 | 19 000 000 | |
| Nicola Petrucci | Free Transfer | Released | 19 000 000 |
| Rafael van der Vaart | Free Transfer | Released | 19 000 000 |
| Joe Cole | 0 | 17 500 000 | 17 500 000 |
| Stefan Selakovic | Free Transfer | Released | 15 000 000 |
| Taribo West | Free Transfer | 16 500 000 | 16 500 000 |
| Félix Gutiérrez | 0 | Released | 16 000 000 |
| Kiko | Free Transfer | 16 000 000 | 16 000 000 |
| Vasilis Lakis | 16 000 000 | 16 000 000 | |
| Vladimir Sorochinskiy | 1 200 000 | Released | 14 800 000 |
| Alonso Solís | Free Transfer | Released | 15 500 000 |
| Mikael Dorsin | 1 400 000 | 14 000 000 | 12 600 000 |
| Jonas Lundén | Free Transfer | 13 000 000 | 13 000 000 |
| Ljubo Kovacevic | Free Transfer | Released | 13 000 000 |
| Demis Nikolaidis | 12 750 000 | 12 750 000 | |
| David Prutton | 2 800 000 | 12 500 000 | 9 700 000 |
| Andrey Milevskiy | 400 000 | 12 000 000 | 11 600 000 |
| Lee Chun-Soo | 350 000 | Released | 11 650 000 |
| Mario Gaunitz | 0 | Released | 11 000 000 |
| Vasilis Tsartas | 11 000 000 | 11 000 000 | |
| David Labat | Free Transfer | Released | 10 500 000 |
| Kim Källström | 2 300 000 | 10 500 000 | 8 200 000 |
| Leandro | 0 | Released | 10 500 000 |
| Anthony Paoli | Free Transfer | 10 000 000 | 10 000 000 |
| Josep Guardiola | Free Transfer | Released | 9 250 000 |
| Miroslaw Szymkowiak | 0 | 9 250 000 | 9 250 000 |
| Darren Barrett | 0 | 9 000 000 | 9 000 000 |
| Facundo Arias | Free Transfer | 9 000 000 | 9 000 000 |
| Frank Overweg | Free Transfer | 9 000 000 | 9 000 000 |
| Guillaume Le Roux | Free Transfer | Released | 8 000 000 |
| Abgar Barsom | 300 000 | 7 000 000 | 6 700 000 |
| Phil Wilson | 0 | Released | 7 000 000 |
| Danilo Boninsegna | Free Transfer | Released | 6 750 000 |
| Sergey Nikiforenko | 350 000 | Released | 6 400 000 |
| Bo Andersson | Free Transfer | 6 000 000 | 6 000 000 |
| Carsten Vogel | Free Transfer | Released | 6 000 000 |
| Thodoris Zagorakis | Released | 5 000 000 | |
| Eric Rabesandratana | 4 800 000 | 4 800 000 | |
| Benjamin Kibebe | 675 000 | 4 000 000 | 3 325 000 |
| Ilias Atmatzidis | 3 800 000 | 3 800 000 | |
| Bruno Chaves | 900 000 | 3 600 000 | 2 700 000 |
| Vasilis Zikos | 3 400 000 | 3 400 000 | |
| Fernando Navas | 3 300 000 | 3 300 000 | |
| Sotiris Konstantinidis | 3 000 000 | 3 000 000 | |
| Grzegorz Mielcarski | 2 600 000 | 2 600 000 | |
| Benjamin Finke | 0 | Released | 2 500 000 |
| Ferrugem | 2 500 000 | 2 500 000 | |
| Michalis Kassapis | 2 500 000 | 2 500 000 | |
| Kieran Richardson | Free Transfer | 2 000 000 | 2 000 000 |
| Michalis Kapsis | 2 000 000 | 2 000 000 | |
| Fernando Molina | Free Transfer | 1 300 000 | 1 300 000 |
| Martijn MacDonald | 0 | 1 200 000 | 1 200 000 |
| Mauro Spinelli | 0 | Released | 1 200 000 |
| Stefan Ostermann | Free Transfer | 1 000 000 | 1 000 000 |
| Eric Roy | Free Transfer | 875 000 | 875 000 |
| Nikos Georgeas | 800 000 | 800 000 | |
| Ilias Anastasakos | 600 000 | 600 000 | |
| Johan Mangfors | Free Transfer | 600 000 | 600 000 |
| Blendar Kola | 500 000 | 500 000 | |
| Sotiris Liberopoulos | Released | 425 000 | |
| Fredrik Risp | Free Transfer | 325 000 | 325 000 |
| Hugo Pinheiro | 8 000 | 100 000 | 92 000 |
| Christos Maladenis | 70 000 | 70 000 |